rs228962705 SNP Detail

Summary

• ID
  rs228962705
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60234655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTTCACTT ACTGGACACA CTCTTTTGGG
  GGAAAAGTCG GAAGAGAAAT CCTGCTTGCA TCGATCAAGT CAGCAGAAAG ACTGCCCTGC
  CCCCACTTGC CTAAGGCAAG AGATCCTGTC CTTTTTGTTT GTTTGTTTGt tttgtttttt
  Y
  gagacaggat ttctctgtgt agctctggct gtcctggaac tcactctgta gaccagactg
  gcctcgaact cagaaatctg cctgcttctg cctcccaagt gctgggatCC TGTCCTTTAA
  CTaagaaaca ccgggttcct acccagcact                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325364	CHEV_10_59861624	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228962705					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60234655 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	988 bp upstream
Rr215449	regulatory region 215449	455 bp distal
Rr223077	regulatory region 223077	25 bp distal
Rr228097	regulatory region 228097	147 bp proximal
Tssr93633	transcription start site region 93633	873 bp upstream
Tssr93634	transcription start site region 93634	926 bp upstream
Tssr93635	transcription start site region 93635	973 bp upstream
Tssr93636	transcription start site region 93636	1877 bp upstream