rs228971796 SNP Detail

Summary

• ID
  rs228971796
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:58308227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAAATTTA GTTTATGGTA TATTGTACTC
  TCCCAAAAGA ATCTAAAGGC CTAATATTAT GGACTTGTGC TATGGAGTGA CATTGCTTAC
  ACATAAGGAG GTAGCTCACA GGGTTCTCTT TCTGCACTTG TTTTTCTCAT ATCTGTCAAT
  S
  ACTTTAAGGT AGGAATAATT TTATTTTTAT CTGCTGGCTG GAAGAGAAGC AAAACTGACT
  TCTCCCACTG GAGATGAATA TGACTACTGT GTCTTTTACT GCAATTACAT GTGAAGTTTC
  CTTCAGCTGT TTCTGCCCTG CAAGTGGCAA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321551760	CHEV_5_58542124	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228971796					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:58308227 () rs orientation: forward

Symbol	Name	Function Class
Gm42976	predicted gene 42976	1041 bp upstream