rs228972168 SNP Detail

Summary

• ID
  rs228972168
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88888745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATAATATA AATAAATCTT
  TTTTTAAAAA ATACTGTATG TGCACATATA AGAGAGAAAA CATTTGTTAA ATTTGGGAGT
  CCCCAAATCC CAAGTGAGTA AAAATTTCTC TTTTTTTTTT TTTCAGTATT GAAAATTGCT
  AGGCAAAGGA CTTTACCACC AAGCTATATT CCCAGACCCT TATTACTTAA GTGAGGGTAG
  R
  GTGGGTTCTA TGTAGCCCAG GCTGGCCTTG AATTTGAGTT CCTCCTGCTT CAGTCTCCCC
  AGAGAGAGTT CTGGGATAAT AGGTGTGTCC CACCTCACCC AATTTAAAAG TATTATAACC
  AATCTGGCTT AGATGAAGAA ATTCTTAAGA GACACTTGTG TCTCAATCTG TTACATTATT
  GAAACAGTGA ACCCCAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323783677	CHEV_11_88859233	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228972168					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88888745 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	1178 bp proximal
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	within coordinates
Rr402858	regulatory region 402858	1346 bp upstream
Trim25	tripartite motif-containing 25	1457 bp upstream
Tssr104062	transcription start site region 104062	1466 bp upstream
Tssr104063	transcription start site region 104063	1523 bp upstream
Tssr110061	transcription start site region 110061	1386 bp upstream