rs228975466 SNP Detail

Summary

• ID
  rs228975466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88187080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACAACAG TCTTCATGAA
  AAACAATCTG TCAAGGATCA GAATTGCTGC CTGCAACTTG GCGGGTGAGA CACGTGTCCA
  GGTTCAGGGG GGATCTTGAA GCCACATAGT TAATCCTGGG TTTGGATGGG GGAGTCAAAG
  CAGCTGAGGT GGGAGGAGGG CGAGCCCTAG TCTAGCTTGC AACACTAGGT CTGCCAGTCC
  Y
  GTTTCATGCT CCCCTGATCT TGCACACTGC CAACTTCAGC CAGATAAGAC ACTTGACTGA
  TGTCTTCACA GGTCAATGTG TGCCTGCCTC TCTTTCTGGG AGGCAGCCAG CCCTGTGGGC
  CTGGCGACCC CTCACTGGAG TTAAGGCATG ACTGTACATC TATCATTTCA GGAATTATTA
  TGAAGCAGCT GTCTGCCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/1J	LP/J	NON/ShiLtJ	QSi5/Ianm	SJL/J	SPRET/EiJ	ZALENDE/EiJ
ss350399136	MGP_WTSI_1_90155933	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/1J	LP/J	NON/ShiLtJ	QSi5/Ianm	SJL/J	SPRET/EiJ	ZALENDE/EiJ
rs228975466					SNP	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399136	MGP_WTSI_1_90155933	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88187080 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	80 bp distal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	233 bp downstream
Tssr7959	transcription start site region 7959	213 bp downstream
Tssr7960	transcription start site region 7960	190 bp downstream
Tssr7961	transcription start site region 7961	161 bp downstream
Tssr7962	transcription start site region 7962	1 bp downstream
Tssr7963	transcription start site region 7963	18 bp upstream
Tssr7964	transcription start site region 7964	33 bp upstream
Tssr7965	transcription start site region 7965	69 bp upstream