rs228979811 SNP Detail

Summary

• ID
  rs228979811
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138561820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTT ATTTTCCTGT GAGCTCCCCC
  A
  TTTCTTTTAA TCTTTATTTT AGAGC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320981674	CHEV_3_138519023	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228979811					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138561820 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65713	predicted gene, 65713			1893 bp downstream
Rr398073	regulatory region 398073			1740 bp downstream
Rr586214	regulatory region 586214			677 bp distal
Rr586215	regulatory region 586215			344 bp proximal
Rr586216	regulatory region 586216			1629 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant