rs228988469 SNP Detail

Summary

• ID
  rs228988469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78233295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTGGGCC CAGCATCCCC
  ACATCCCGAA GGCCTCCTTG TTCTTCAGCA GGTTGGGGAC TACTGCTTCC TCCCTGGCCT
  GGGACCTGGC TCCCTCTCAC CACACAGTAA GCCACCCTCT CCAAGTCTGT GTTCTGAGAC
  TGAGGACCTA GTCCAGGACT TGTCTGTCAA AAAGTTTCCC TATCAGCCCA TGCCCCAGGC
  R
  CCAGCCATTC AGTTTTTCAA GTCCCTAAAG CATCAGGACT ACCTGTCCCT GCCCCCTTGG
  GACAATAGCC AGTCTGGGAA GGTGTGCTGA GTCTGTCTCC TCCCAATCTC ACCAGCAGCC
  TGGCACCGCA GCCTGTGGTC CTCAGCCTGA GCATCACCAC AGAAGCCTCT CTGAGTTCAC
  ACTCCTCCTT GCTCCCAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394652050	MGP_WTSI_15_78179525	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228988469					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394652050	MGP_WTSI_15_78179525	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78233295 () rs orientation: forward

Symbol	Name	Function Class
Csf2rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	within coordinates
Mir7676-2	microRNA 7676-2	435 bp downstream
Rr505249	regulatory region 505249	686 bp distal
Tssr131932	transcription start site region 131932	1016 bp downstream
Tssr131933	transcription start site region 131933	932 bp downstream
Tssr131934	transcription start site region 131934	866 bp downstream
Tssr131935	transcription start site region 131935	804 bp downstream
Tssr131936	transcription start site region 131936	136 bp downstream
Tssr131937	transcription start site region 131937	111 bp downstream
Tssr131938	transcription start site region 131938	25 bp downstream
Tssr131939	transcription start site region 131939	within coordinates
Tssr131940	transcription start site region 131940	73 bp upstream
Tssr131941	transcription start site region 131941	167 bp upstream
Tssr131942	transcription start site region 131942	205 bp upstream