rs228991557 SNP Detail

Summary

• ID
  rs228991557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:79391214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTAGAAC TGCAAACTGC
  ATTGGCATCC CTGCACAATT TAAATATTAT TCTCAGTAAA ACTGCGGCAC AGAGCTGGTG
  GCTCCTGTTT ACAACTCCAG CACCCAGAAG ATGGAGAGAA GAGAATTATG GGAGCAGTCT
  GGGCCACATA GTAAGACTTT CTCAAAATAA ATAAAATTCT CCCCAAAGTG GTACATTTTT
  Y
  ACAATGATGA GTTGGTTTTT ATTTGTTTGT TTGTTTGTTT GGTTGGTTGG TGGGTTTTTC
  GAGACAGGGT TTCTCTGTAT AGCCCTGGCT GTCCTGGAAC TCACTTTGTA GACCAGGCTG
  GCCTCGAACT CAGAAATCTG CCTACCTCTG CCTCCCGGGT GCTGGGATTA AAGACGTGCG
  CCACCACGCC CGGCTTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372031060	MGP_WTSI_7_86886352	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228991557					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372031060	MGP_WTSI_7_86886352	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79391214 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19314	CpG island 19314			1195 bp proximal
Gm44706	predicted gene 44706			within coordinates
Pex11a	peroxisomal biogenesis factor 11 alpha			Intron
				Noncoding-Transcript-Variant
Rr649701	regulatory region 649701			1604 bp proximal
Rr649702	regulatory region 649702			1708 bp proximal
Tssr67364	transcription start site region 67364			1676 bp upstream
Tssr67365	transcription start site region 67365			1704 bp upstream
Tssr73125	transcription start site region 73125			1501 bp downstream
Tssr73126	transcription start site region 73126			1519 bp downstream
Tssr73127	transcription start site region 73127			1549 bp downstream
Tssr73128	transcription start site region 73128			1568 bp downstream
Tssr73129	transcription start site region 73129			1638 bp downstream
Wdr93	WD repeat domain 93			1697 bp upstream