rs228996487 SNP Detail

Summary

• ID
  rs228996487
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32007610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCT GCTGTCATCC ATGAGCCCAA
  A
  CCACCCAAGA CGCAGGGCCA TTAGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323629153	CHEV_11_31957610	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228996487					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32007610 () rs orientation: forward

Symbol	Name	Function Class
Nsg2	neuron specific gene family member 2	within coordinates
Tssr100825	transcription start site region 100825	59 bp upstream
Tssr100826	transcription start site region 100826	152 bp upstream
Tssr100827	transcription start site region 100827	1232 bp upstream
Tssr100828	transcription start site region 100828	1279 bp upstream