rs228998390 SNP Detail

Summary

• ID
  rs228998390
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45227725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCCCTCC CAAGATAGGA
  TGTTGACAAT GTTATAATCT GATCACTGGG GCCCACTTTG CTATCCTTGA GGCCCCTTCT
  CTTGGTGCTT TCATTTCTCC TGAGCAAAAT GTAGTTGTCA ACACACAGCA TTCAGAAGGC
  CCTTGGTGTA GAAGGTTACA GCCTCTTTCA TTTGACTTTA GGAACATTAA GTTACAAAAT
  W
  GTTTCTTGAT GTCACTGTCA GGAGCACACA TAGATGCTCC TCATTCTGTA GCTGTGCACT
  TTGTGAGCAC ATAGATAAAT TCAGTAACAG CTGGAACATC TCAGGGATGA GGGAAAAGGT
  TGCTTGGGGA ACTGAGGCAG GGCCAGGATA GAAACATGGG TGTTGCTCAG TTAGAGGCAG
  CATTGACAGT GAGATCTGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390953922	MGP_WTSI_14_45609943	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	A	T	T	T	T	A	T	A	A	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228998390					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	A	T	T	T	T	A	T	A	A	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390953922	MGP_WTSI_14_45609943	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45227725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	416 bp distal
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	382 bp upstream
Ptger2	prostaglandin E receptor 2 (subtype EP2)	within coordinates
Rr491041	regulatory region 491041	within coordinates
Tssr4380	transcription start site region 4380	1456 bp upstream
Tssr125201	transcription start site region 125201	1796 bp downstream
Tssr125202	transcription start site region 125202	1657 bp downstream
Tssr125203	transcription start site region 125203	1596 bp downstream
Tssr125204	transcription start site region 125204	1349 bp downstream
Tssr128221	transcription start site region 128221	589 bp upstream
Tssr128222	transcription start site region 128222	398 bp upstream
Tssr128223	transcription start site region 128223	342 bp upstream