rs228998762 SNP Detail

Summary

• ID
  rs228998762
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181241102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACCCGCC GCAGCCGGCC
  AAGCCCAAGC CGGTCCCCGC GGCCGGGGAG TCTGCGCGGC AAAGCACCTG CCGCCCAGCC
  CTGGGCGCAA GGCGCGCTCC GGGAGCTCGG AGGTGTATCG GCGGCGCGCG GGGCTGCGTA
  TGCTTAGGAT GTCCGCCAGA GCGAAAGGCG TCCTTGCGCA CCTGGGTAGG ACTCCGTGGA
  Y
  CAGCCTCTCT TGCAACCCGC TGGAGGGCCT TTGCAGTTGG CAGGCGAGGT CCCCTCGGTC
  TGGTGGTGGT GGGGATAATC ATGCCTGTGC GCTTTTAGCT ACTCAGTCTG GCCAAGGGCC
  ACATCATTCT CTCCCAAACA CCTGTGTGTC CTAATTTGCC CATTCCTTTT TTTTTTTTTA
  ATTTTATGAG TGTTTTGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356781248	MGP_WTSI_2_181334014	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228998762					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356781248	MGP_WTSI_2_181334014	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181241102 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12932	CpG island 12932	within coordinates
Cpgi12933	CpG island 12933	1566 bp proximal
Rr397594	regulatory region 397594	1861 bp upstream
Rr573053	regulatory region 573053	1810 bp distal
Rr573054	regulatory region 573054	108 bp distal
Rr573055	regulatory region 573055	within coordinates
Rr573056	regulatory region 573056	1517 bp proximal
Samd10	sterile alpha motif domain containing 10	mRNA-UTR
Tssr28219	transcription start site region 28219	1700 bp upstream
Tssr28220	transcription start site region 28220	329 bp upstream
Tssr28221	transcription start site region 28221	267 bp upstream
Tssr28222	transcription start site region 28222	74 bp upstream
Tssr28223	transcription start site region 28223	48 bp upstream
Tssr28224	transcription start site region 28224	29 bp upstream