rs229002701 SNP Detail

Summary

• ID
  rs229002701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:44380571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTGCCC AGCTCCATCT
  CACTTTGTCA GAACTGACGG GGAGAACACA AAACATTTGA ATGGGTTGAT AGACAGGCTC
  AAGCGAGGCC GTGTGTTTTG TTCCCAAAGT AAAGTATGGT TTTAACCACA GAAAGTAACA
  TTTGATATTT CTGAACCAGT GGGGAACTGA GCCAGTCTAG GTTTTAACCA CTGTAGAACA
  Y
  GCCCACGGTA ATCCTGACTC TGGAGGAGGG TGGACAAGGA CATCAGAAGT AGTCACATAG
  CTCGACGGAG TAAGCGGACC ACGGGCGTGT GCGTGCGTGC GCGCGTGCGT GCTTGCGTAC
  TGGAGAGCTG GTCAGGCTGG ACGGAGGCCC CGTGACTGGA CACAGGCAAT TTGGAACCTT
  GTTAGATTAT AAGTGAGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321100978	CHEV_4_44393443	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229002701					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44380571 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14212	CpG island 14212	within coordinates
Gm68903	predicted gene, 68903	within coordinates
Rr89080	regulatory region 89080	1230 bp proximal