rs229004891 SNP Detail

Summary

• ID
  rs229004891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19242080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAATTAGG CAGACTTTGA
  GGCGGGGGAA CTGAAGGCAG GAAAAGTCTT CACTCCCTCT GAGCCGCGCC TTCCACTCCT
  CCAGAACATA CGTCCGGGAT TTGAGGCCCG AAACAGATCG CCCTGGCAGA CAAAGTCCCC
  ACAGAGCGTG GGTTGAGAAG GGCTCGACAC AGGCTAGGCT AGGCTAGGCT AAGGACCTAG
  Y
  TCCTTTCAGC GGGCACACAT TTGAGACTTC ACTCGGAATG TGGGTATTCC TACACCCAAA
  AGGGGCGAAG TTTACCAACA AAAATAACAG GGGCAGAAGC ACCCAAGACA AAGCGCGGCA
  CACTAGCAAG CACACGCCCC TTACTGGGCA CCGCGCGTGC GCACAGAGCC CGGGACAGGT
  AGCCGGCGTG GCCGGCGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357150178	MGP_WTSI_3_19087916	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229004891					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357150178	MGP_WTSI_3_19087916	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19242080 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	within coordinates
Gm65217	predicted gene, 65217	1559 bp downstream
Mtfr1	mitochondrial fission regulator 1	within coordinates
Rr397614	regulatory region 397614	70 bp upstream
Rr573951	regulatory region 573951	559 bp distal
Rr573952	regulatory region 573952	within coordinates
Rr573953	regulatory region 573953	205 bp proximal
Rr573954	regulatory region 573954	1331 bp proximal
Rr573955	regulatory region 573955	1848 bp proximal
Tssr28500	transcription start site region 28500	600 bp downstream
Tssr28501	transcription start site region 28501	565 bp downstream
Tssr28502	transcription start site region 28502	554 bp downstream
Tssr28503	transcription start site region 28503	543 bp downstream
Tssr28504	transcription start site region 28504	169 bp upstream
Tssr28505	transcription start site region 28505	183 bp upstream
Tssr28506	transcription start site region 28506	196 bp upstream
Tssr28507	transcription start site region 28507	298 bp upstream
Tssr28508	transcription start site region 28508	310 bp upstream
Tssr28509	transcription start site region 28509	372 bp upstream