rs229023585 SNP Detail

Summary

• ID
  rs229023585
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13253462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACCCAGG GTCTGAGAGA
  AATCTAGCTT TACTTCAGGA GTTAAGCATT TCTGAGGCTG TTCCCTCAGA GTAAAGCAAA
  TGGAGACAGA CCCAAGAAGA GTGGATGAGG CATTGCTGTG GATGAATAAA GATGGCAACA
  GCTGAACCCA CTGACATGTC TGCAGTACCA ACTACCTAGG TGACCAGCCA GACTGCATCA
  R
  CTCCCTGGTT CCCATCCCCT TCCAGTCCCC ATCTTAACTG CTTTTCTATT GCTGTGAAGA
  GACACCATGA CCAAGGTAAC TTATAGAAGA AAGAGTTTAT TGGTGCTTAT AAGTTCAGAG
  GACTAGAGTC TATACCATCA TGGTGGGGAG CATGTCTGAA AGCTGGCAGG CATGGCACTG
  GAGCAGTAGC CGAGAGTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505074	CHEV_8_13203462	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229023585					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13253462 () rs orientation: forward

Symbol	Name	Function Class
2810030D12Rik	RIKEN cDNA 2810030D12 gene	1672 bp downstream
Gm56825	predicted gene, 56825	1229 bp upstream
Rr659874	regulatory region 659874	1979 bp distal
Rr659875	regulatory region 659875	1749 bp distal
Rr659876	regulatory region 659876	1240 bp distal
Rr659877	regulatory region 659877	739 bp distal
Rr659878	regulatory region 659878	262 bp proximal
Rr659879	regulatory region 659879	353 bp proximal
Rr659880	regulatory region 659880	507 bp proximal