rs229026822 SNP Detail

Summary

• ID
  rs229026822
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71050048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAAGTGA CCGGACCGGA
  CCCTTCTACC CCCAATGCCT CCAACCATAG TACTTCAGCC CTTGCCAAAG ACAATAAAGC
  AAGTCTCAAG CAAGCCTCCT TGTGTGCTTT TTCCAGGAAG GGGTCTCAGG TTGACCTGGA
  ATATGCTATG TAGACCAGGC TAGGCTGGCC TCAAACTCAC GCCTTGCCTC AGCCTATGGG
  K
  GAAGGTGGGC TCCCAGCCCA TCAAAGTACA GATTTAGGCC ATAGCAAGAT TTTTAGGCCA
  TGTCAAGTAA AAGACATCAG CAGTACCAAA GTCAAAACGG AATGGCATTT ATTGGCAGAA
  CCCCTGCCCC CACCCCCCAG CCTTGTGTGC ACAGAGGTCC AGAGGCCTGC ACTTCTCTGA
  GGTCCTTTTG AGTTTGTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375102932	MGP_WTSI_8_73121297	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229026822					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375102932	MGP_WTSI_8_73121297	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71050048 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20472	CpG island 20472	1854 bp distal
Cpgi20473	CpG island 20473	149 bp proximal
Isyna1	myo-inositol 1-phosphate synthase A1	108 bp downstream
Rr177468	regulatory region 177468	1048 bp distal
Rr177469	regulatory region 177469	248 bp distal
Rr186759	regulatory region 186759	1647 bp distal
Rr186760	regulatory region 186760	within coordinates
Ssbp4	single stranded DNA binding protein 4	87 bp downstream
Tssr77776	transcription start site region 77776	547 bp downstream
Tssr81632	transcription start site region 81632	1026 bp downstream