rs229027859 SNP Detail

Summary

• ID
  rs229027859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149978337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACACTGTG CCTCAAAACA CAACAGTCGT
  ATTGATGTTG TGATCTTCTT TGAGACGGTG CTTCTAAGTG ATGGATGCTG TCATGTATTA
  TACAGTCATC TGTTTGCTTG AACAAATAGG TGAATGGATA GATACTTACT TTAGAATTTA
  Y
  ATGTTCCAGG AAATAAGGAG CTTCCTGATT CAAAAGAAGT GCTGGAAAAG GTTCTTCTAC
  GGAGAGAGTT CATCCCTGAC CCCCAAGGCT CAAATATGAT GTTTGCATTC TTTGCCCAGC
  ACTTCACCCA TCAGTTTTTC AAGACAGATC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320045529	CHEV_1_151949716	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229027859					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149978337 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	1664 bp proximal
Rr24983	regulatory region 24983	1696 bp proximal
Rr31002	regulatory region 31002	937 bp distal
Tssr242	transcription start site region 242	214 bp upstream
Tssr9223	transcription start site region 9223	1637 bp downstream
Tssr9224	transcription start site region 9224	1529 bp downstream
Tssr9225	transcription start site region 9225	1404 bp downstream
Tssr9226	transcription start site region 9226	1391 bp downstream
Tssr9227	transcription start site region 9227	1313 bp downstream
Tssr9228	transcription start site region 9228	1273 bp downstream
Tssr9229	transcription start site region 9229	1260 bp downstream
Tssr9230	transcription start site region 9230	473 bp downstream
Tssr9231	transcription start site region 9231	440 bp downstream
Tssr9232	transcription start site region 9232	397 bp downstream
Tssr9233	transcription start site region 9233	56 bp upstream
Tssr9234	transcription start site region 9234	60 bp upstream
Tssr9235	transcription start site region 9235	100 bp upstream
Tssr9236	transcription start site region 9236	137 bp upstream
Tssr9237	transcription start site region 9237	156 bp upstream
Tssr9238	transcription start site region 9238	185 bp upstream
Tssr9239	transcription start site region 9239	226 bp upstream
Tssr9240	transcription start site region 9240	248 bp upstream
Tssr9241	transcription start site region 9241	274 bp upstream
Tssr9242	transcription start site region 9242	294 bp upstream
Tssr9243	transcription start site region 9243	418 bp upstream
Tssr9244	transcription start site region 9244	463 bp upstream
Tssr9245	transcription start site region 9245	483 bp upstream
Tssr9246	transcription start site region 9246	520 bp upstream
Tssr9247	transcription start site region 9247	659 bp upstream
Tssr9248	transcription start site region 9248	1079 bp upstream
Tssr9249	transcription start site region 9249	1106 bp upstream
Tssr9250	transcription start site region 9250	1274 bp upstream
Tssr9251	transcription start site region 9251	1320 bp upstream
Tssr9252	transcription start site region 9252	1375 bp upstream
Tssr9253	transcription start site region 9253	1405 bp upstream
Tssr9254	transcription start site region 9254	1432 bp upstream
Tssr9255	transcription start site region 9255	1451 bp upstream
Tssr9256	transcription start site region 9256	1691 bp upstream
Tssr9257	transcription start site region 9257	1715 bp upstream
Tssr9258	transcription start site region 9258	1738 bp upstream
Tssr9259	transcription start site region 9259	1763 bp upstream
Tssr9260	transcription start site region 9260	1818 bp upstream
Tssr9261	transcription start site region 9261	1873 bp upstream
Tssr9262	transcription start site region 9262	1881 bp upstream
Tssr9263	transcription start site region 9263	1903 bp upstream
Tssr9264	transcription start site region 9264	1948 bp upstream
Tssr9265	transcription start site region 9265	1979 bp upstream
Tssr14130	transcription start site region 14130	1324 bp upstream
Tssr14131	transcription start site region 14131	1268 bp upstream