rs229028004 SNP Detail

Summary

• ID
  rs229028004
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117581143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGATGTCT TACAACACTA
  AGGAAACATA ACAGTGGGGC TGGGGTGGGG GAGCACTGTA AGTTTTCTTT GGGGAAAACT
  GCCAATCCTT CTCTACAGAG ATTCACATAC AACTCTACAT CTGGAAGAAA ATATGAATCC
  GTGCGTTGTG CTTTGTAAGG AAACAGGACA CACATTTACA GGGAATAAAA TAATCCCCCA
  M
  ACCAGTACTT AACACATAAG CATAAACAAG GAAGGAGGAA AGCATTATGA CTGGAAAAAC
  GAAAAAACCA CTAAGTGCTA ATGTTATTTT AACGAATCTC CTTTTATGTA AACACAAGGC
  ACCCCAGCAG TGTGCCACTG AAGGTGTATT CCGAGGTATT TTATGCTAAA CCATTTCATG
  TTTATCACTT CTGGTTCGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499175	CHEV_10_117182294	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229028004					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117581143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2238	CpG island 2238	355 bp proximal
Cpgi2239	CpG island 2239	1058 bp proximal
Gm66856	predicted gene, 66856	1243 bp upstream
Rr439608	regulatory region 439608	781 bp distal
Rr439609	regulatory region 439609	1394 bp distal
Rr439610	regulatory region 439610	704 bp proximal
Rr439611	regulatory region 439611	1117 bp proximal
Rr439612	regulatory region 439612	1254 bp proximal
Slc35e3	solute carrier family 35, member E3	within coordinates
Tssr99471	transcription start site region 99471	1093 bp downstream
Tssr99472	transcription start site region 99472	1118 bp downstream