rs229032733 SNP Detail

Summary

• ID
  rs229032733
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87827326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATATCGGG GTGAGTCTGA
  CGAGGGAATT ACTTGAGGCG GTGACCTGAG GACTTGTACT GAGAAGAAAG CCAGCCCCAC
  CACGGAAGTG ACACTAGCTA GCATCTAGGT TGTGTAGGGA ACCAAAGGGA AAGATGGAGT
  GGGGGCCTGT CCGGGGCCTA AAGGAGTTTT TAAAACAAAC AAGCAAGACC CCCCCCCCCC
  M
  CACACACACA CATACACACT TGTGATGCTG CATGCTAAGA GAGGGCAAGG TTTTCCTGGA
  TCTTGCTGTT AGCATCCCTT ACTGAGTTCT CAGTTTTCGA CTTGTCAGGT AGTAGTTAGT
  GCTTAGTAAT CGTGTATTTG ATCTAGATAG AAATAGTCCC CGTGTTTCTC TAGCATCATG
  GTAACACTTG ACTTTGCTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ
ss358786210	MGP_WTSI_3_87723941	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	A	C	C	A	A	A	C	A	A	A	C	A	C	C	A	A	C	A	A	C	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ
rs229032733					SNP	C	A	A	C	C	A	A	A	C	A	A	A	C	A	C	C	A	A	C	A	A	C	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358786210	MGP_WTSI_3_87723941	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87827326 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13346	CpG island 13346	162 bp distal
Gm64606	predicted gene, 64606	616 bp upstream
Mrpl24	mitochondrial ribosomal protein L24	within coordinates
Rr367453	regulatory region 367453	466 bp downstream
Rr579573	regulatory region 579573	627 bp distal
Rr579574	regulatory region 579574	446 bp distal
Rr579575	regulatory region 579575	within coordinates
Rr579576	regulatory region 579576	578 bp proximal
Tssr29862	transcription start site region 29862	522 bp downstream
Tssr29863	transcription start site region 29863	493 bp downstream
Tssr29864	transcription start site region 29864	461 bp downstream
Tssr29865	transcription start site region 29865	443 bp downstream
Tssr29866	transcription start site region 29866	342 bp downstream
Tssr29867	transcription start site region 29867	306 bp downstream
Tssr29868	transcription start site region 29868	1876 bp upstream