rs229039706 SNP Detail

Summary

• ID
  rs229039706
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115152684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGATACA TGGGAAGCTA
  GCTGAGTTAG CGTCCTAGAA GAGCTTCCTG GAGAAAGCTG CCTTTTGTTA GGAGTATCTT
  CGGCAAAAAG GAGAGCCGTG AAGTAGAAAG GAGCATCCGA CATTGACGTG TGACAAGAAG
  TCAGACAAGA AATCAGAGAC ATTACCTTTA AGTTCAAGGC CAGCCTCTTT TGAATTGTGA
  R
  CTCTAAGCTA ATTGGAGCTA CATAGCAAGA CACCATTTCA GTAATAATAA TAATGATAAT
  ATTTACAATA ATAATGCAAA TAGGAAAAGA ATTTGTGATG TAACTTGCAA GGTATCAATT
  CAAAAACAGT CTTTAACCTG GTACAGAATG TTATCGGGTC CTTTTACAAA ATTATAATTA
  GAAAATTGGA CAAGGCTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381864285	MGP_WTSI_10_114753835	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229039706					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381864285	MGP_WTSI_10_114753835	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115152684 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	666 bp distal
Gm10752	predicted gene 10752	within coordinates
Gm67120	predicted gene, 67120	within coordinates
Rab21	RAB21, member RAS oncogene family	1144 bp upstream
Rr402237	regulatory region 402237	1014 bp downstream
Rr402238	regulatory region 402238	318 bp downstream
Rr439193	regulatory region 439193	1190 bp distal
Rr439194	regulatory region 439194	1140 bp distal
Rr439195	regulatory region 439195	79 bp distal
Rr439196	regulatory region 439196	952 bp distal
Rr439197	regulatory region 439197	751 bp proximal
Rr439198	regulatory region 439198	892 bp proximal
Tssr95806	transcription start site region 95806	1725 bp downstream
Tssr95807	transcription start site region 95807	1685 bp downstream
Tssr95808	transcription start site region 95808	1109 bp downstream
Tssr95809	transcription start site region 95809	1085 bp downstream
Tssr99318	transcription start site region 99318	1892 bp upstream
Tssr99319	transcription start site region 99319	1849 bp upstream
Tssr99320	transcription start site region 99320	1257 bp upstream
Tssr99321	transcription start site region 99321	1164 bp upstream
Tssr99322	transcription start site region 99322	1155 bp upstream