rs229040706 SNP Detail

Summary

• ID
  rs229040706
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184581975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAACCTG GCCTGGGGAG
  AAAGATGGCG AGTCCTGTTG TCAAGTATGA GACATTTGTG AGATATCCAA GAAGAAATAG
  CTTCCCAGAC AGGTAATTGA ACCTTCTGGG CTTCCACTGC CCTGGTTGTA AAGTGATGGG
  TTACAGCTTA GGCATAGCTA TAGATGCTGG ATTTCACAGA TCTGGGCTGT TTCTGAGCTC
  Y
  GTGATCAGAC CAGTGAGGGC CTTCGCCATA GTGAATGCCA GTCCTCTGCT CTCTGAGCTC
  ACCATTACCC AATATGTGCC CTGCCAGGAC GCCCTGTCCC AGTGGCTTTT AGCAGAGAAG
  CCTCCTATCC GTCACCTTGG CAGACCCCCT TGTCTGCAGC AGTAGCTGAC GGGAGGCTGG
  GGACCACCAC TCGTCTATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169891	CHEV_1_186673657	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229040706					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184581975 () rs orientation: forward

Symbol	Name	Function Class
Gm34451	predicted gene, 34451	within coordinates
Rr372580	regulatory region 372580	within coordinates
Rr425307	regulatory region 425307	1340 bp proximal