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rs229054067 SNP Detail
Summary
  • ID
    rs229054067
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr19:5848293 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCCCTGACTT TCTGGAAACA
AAATATGTAG TTACCTTTTA CTCTGACCAT CATCTCCCAC CTGCCTAAGG TACTTAGTCC
TTAGTTAGAC GGCCTCTATG CCAGGCCTGC AATTATTAAA TGCTCATCAC TGCATGGAGA
ATAAAATTTG TCTTTCCTGC CTTAAAGTTA ATTTCGGTCT TCTGGCTCAA ATCCTGATCT
K
GTCCACTTAA GTGTTCGAAG TCAAGTTTCT GAAAAGATTA GAGAAGAACA TCCCCCCAAA
ATTGCCCACA CTAACTACAG ACAACAAACA AGACTTTATT TAAATAAGGA GACAGCCTTC
TAAATACATA CATTCTCTAG TGAAGTATTT TATTAATTTG TATAATTTAA TGATTTTAAG
CACAAGTACA TTGGAGCACA                                            

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401662579 MGP_WTSI_19_5798265 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229054067 SNP G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401662579 MGP_WTSI_19_5798265 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:5848293 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm55521 predicted gene, 55521 735 bp downstream
Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) within coordinates
Rr543161 regulatory region 543161 within coordinates
Rr543162 regulatory region 543162 295 bp proximal
Rr543163 regulatory region 543163 1153 bp proximal
Tssr5415 transcription start site region 5415 1399 bp upstream
Tssr5416 transcription start site region 5416 950 bp upstream
Tssr5417 transcription start site region 5417 761 bp downstream
Tssr5418 transcription start site region 5418 1244 bp downstream
Tssr5419 transcription start site region 5419 1898 bp downstream
Tssr5420 transcription start site region 5420 1915 bp downstream
Tssr157645 transcription start site region 157645 1884 bp upstream
Tssr157646 transcription start site region 157646 1782 bp upstream
Tssr157647 transcription start site region 157647 1695 bp upstream
Tssr157648 transcription start site region 157648 1528 bp upstream
Tssr157649 transcription start site region 157649 1436 bp upstream
Tssr157650 transcription start site region 157650 1371 bp upstream
Tssr157651 transcription start site region 157651 1301 bp upstream
Tssr157652 transcription start site region 157652 1161 bp upstream
Tssr157653 transcription start site region 157653 1077 bp upstream
Tssr157654 transcription start site region 157654 1023 bp upstream
Tssr157655 transcription start site region 157655 997 bp upstream
Tssr157656 transcription start site region 157656 964 bp upstream
Tssr157657 transcription start site region 157657 844 bp upstream
Tssr157658 transcription start site region 157658 738 bp upstream
Tssr157659 transcription start site region 157659 634 bp upstream
Tssr157660 transcription start site region 157660 538 bp upstream
Tssr157661 transcription start site region 157661 505 bp upstream
Tssr157662 transcription start site region 157662 412 bp upstream
Tssr157663 transcription start site region 157663 351 bp upstream
Tssr157664 transcription start site region 157664 237 bp upstream
Tssr157665 transcription start site region 157665 228 bp upstream
Tssr157666 transcription start site region 157666 196 bp upstream
Tssr157667 transcription start site region 157667 45 bp downstream
Tssr157668 transcription start site region 157668 92 bp downstream
Tssr157669 transcription start site region 157669 107 bp downstream
Tssr157670 transcription start site region 157670 127 bp downstream
Tssr157671 transcription start site region 157671 144 bp downstream
Tssr157672 transcription start site region 157672 193 bp downstream
Tssr157673 transcription start site region 157673 210 bp downstream
Tssr157674 transcription start site region 157674 240 bp downstream
Tssr157675 transcription start site region 157675 259 bp downstream
Tssr157676 transcription start site region 157676 270 bp downstream
Tssr157677 transcription start site region 157677 292 bp downstream
Tssr157678 transcription start site region 157678 304 bp downstream
Tssr157679 transcription start site region 157679 341 bp downstream
Tssr157680 transcription start site region 157680 396 bp downstream
Tssr157681 transcription start site region 157681 425 bp downstream
Tssr157682 transcription start site region 157682 443 bp downstream
Tssr157683 transcription start site region 157683 469 bp downstream
Tssr157684 transcription start site region 157684 485 bp downstream
Tssr157685 transcription start site region 157685 495 bp downstream
Tssr157686 transcription start site region 157686 510 bp downstream
Tssr157687 transcription start site region 157687 579 bp downstream
Tssr157688 transcription start site region 157688 629 bp downstream
Tssr157689 transcription start site region 157689 660 bp downstream
Tssr157690 transcription start site region 157690 738 bp downstream
Tssr157691 transcription start site region 157691 784 bp downstream
Tssr157692 transcription start site region 157692 838 bp downstream
Tssr157693 transcription start site region 157693 895 bp downstream
Tssr157694 transcription start site region 157694 953 bp downstream
Tssr157695 transcription start site region 157695 1017 bp downstream
Tssr157696 transcription start site region 157696 1038 bp downstream
Tssr157697 transcription start site region 157697 1087 bp downstream
Tssr157698 transcription start site region 157698 1103 bp downstream
Tssr157699 transcription start site region 157699 1161 bp downstream
Tssr157700 transcription start site region 157700 1210 bp downstream
Tssr157701 transcription start site region 157701 1228 bp downstream
Tssr157702 transcription start site region 157702 1264 bp downstream
Tssr157703 transcription start site region 157703 1315 bp downstream
Tssr157704 transcription start site region 157704 1341 bp downstream
Tssr157705 transcription start site region 157705 1362 bp downstream
Tssr157706 transcription start site region 157706 1410 bp downstream
Tssr157707 transcription start site region 157707 1456 bp downstream
Tssr157708 transcription start site region 157708 1466 bp downstream
Tssr157709 transcription start site region 157709 1478 bp downstream
Tssr157710 transcription start site region 157710 1497 bp downstream
Tssr157711 transcription start site region 157711 1516 bp downstream
Tssr157712 transcription start site region 157712 1553 bp downstream
Tssr157713 transcription start site region 157713 1580 bp downstream
Tssr157714 transcription start site region 157714 1631 bp downstream
Tssr157715 transcription start site region 157715 1648 bp downstream
Tssr157716 transcription start site region 157716 1692 bp downstream
Tssr157717 transcription start site region 157717 1719 bp downstream
Tssr157718 transcription start site region 157718 1764 bp downstream
Tssr157719 transcription start site region 157719 1818 bp downstream
Tssr157720 transcription start site region 157720 1837 bp downstream
Tssr157721 transcription start site region 157721 1873 bp downstream
Tssr157722 transcription start site region 157722 1890 bp downstream
Tssr157723 transcription start site region 157723 1965 bp downstream
Tssr157724 transcription start site region 157724 1974 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory