rs229061221 SNP Detail

Summary

• ID
  rs229061221
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134484547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTTGGAAC TCAGCCTGCT GGGGGAGGTT
  GAGGTCTGAC GGCTGAGTGG GCCGGATAAA GACATCGATC CCTAGGGATG TATCCAGAGG
  CTCTCCAGCA CTCATGGGGT GGTTGGGGGA CGGAGTCCGG GGCGGAGGCG GAGTGTTGTC
  S
  AAGAGTAAGG AGGGGGGTTC CTGGAGACGT GGCACTCTGA GCGGGCTCGG TTTTACTCCG
  GGCGCCGGGG CTGCAGCCCC TCTTTCCCCG AGAACCTGGC ACTGTGGCTC CGCCCAGCCC
  TCGCTCCCAG CCCTCTGGGA GCCTGAGACC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319983156	CHEV_1_136453386	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229061221					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134484547 () rs orientation: forward

Symbol	Name	Function Class
Cpgi772	CpG island 772	within coordinates
Gm57134	predicted gene, 57134	within coordinates
Rr367005	regulatory region 367005	151 bp upstream
Rr418945	regulatory region 418945	within coordinates
Rr418946	regulatory region 418946	818 bp distal
Rr418947	regulatory region 418947	375 bp distal
Rr418948	regulatory region 418948	283 bp proximal
Tssr13798	transcription start site region 13798	178 bp downstream