rs229067689 SNP Detail

Summary

• ID
  rs229067689
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:3122462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAAAAT TGTAAAAGAA
  CTGAAATCAT ACTAAATAGC ATCCTGTGAC CATAATGGAA TACACTAGAG ACCTTAACTG
  CGAGAGTTCA AGGTCAGGGC CTGAGGAGCG AGGCAGCTCA GCAGGTAAGA ACACTGGTTG
  CTTTTGCAGA GGATCCCTGC TCAGTTCCCA GCACCCACAC AGTGGCTCAC AACAGTCTGC
  M
  ATTCCAGCTC CAGGGGATCC AATATTTTCA TCTGATCTCG GTGTACACCA AACACACACA
  TGTTGTGCAT ACATATGGGA AAGCAAAATA CTCATACATA AAATAATTTT CTAGCCGGGC
  AGTGATGGCA CATGCCTTTA ATCCCAGCAC TCAGAAGGCA GAGGCAGGTG GATTTCTGAG
  TTCGAGGCCA GCCTGGTCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	SPRET/EiJ
ss382237228	MGP_WTSI_11_3072465	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	SPRET/EiJ
rs229067689					SNP	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382237228	MGP_WTSI_11_3072465	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3122462 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2457	CpG island 2457			within coordinates
Cpgi2458	CpG island 2458			802 bp proximal
Rr441481	regulatory region 441481			12 bp distal
Rr441482	regulatory region 441482			1180 bp distal
Rr441483	regulatory region 441483			246 bp distal
Rr441484	regulatory region 441484			209 bp proximal
Rr441485	regulatory region 441485			729 bp proximal
Rr441486	regulatory region 441486			1511 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)			Intron
				Noncoding-Transcript-Variant
Tssr106448	transcription start site region 106448			333 bp downstream
Tssr106449	transcription start site region 106449			857 bp downstream