rs229074301 SNP Detail

Summary

• ID
  rs229074301
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130547079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GAAAAGAAA GAGTAAATAA GTGGCTGTCC
  GCCTGGATTT AAGCCACCTG CCATCCTTTT TCTCTTTCGT CTTAAGACAT TAGTAGGTGG
  TTGGTGCTTT CTGTGTCTTC ATTTCTTTAC CTGTGAAGGG aagaccagag aaggtacaca
  Y
  actggtaatc ttatcactgg ggaaactgag gcaggaggat tgctgcaagt tcagttcagc
  ctgggctatg cagtaagact gtttcaaaga gagaggcaga gacagagaga cAGGGAGAGA
  GGCCTGGTGT GGTCTGTACA TGGTCTTTCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318848	CHEV_4_130375683	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229074301					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130547079 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39265	transcription start site region 39265	1162 bp downstream
Tssr39266	transcription start site region 39266	1140 bp downstream
Tssr39267	transcription start site region 39267	1121 bp downstream
Tssr39268	transcription start site region 39268	1091 bp downstream
Tssr39269	transcription start site region 39269	1054 bp downstream
Tssr39270	transcription start site region 39270	1025 bp downstream
Tssr39271	transcription start site region 39271	980 bp downstream
Tssr39272	transcription start site region 39272	964 bp downstream
Tssr39273	transcription start site region 39273	909 bp downstream
Tssr39274	transcription start site region 39274	867 bp downstream
Tssr39275	transcription start site region 39275	851 bp downstream
Tssr39276	transcription start site region 39276	815 bp downstream
Tssr39277	transcription start site region 39277	798 bp downstream
Tssr39278	transcription start site region 39278	787 bp downstream
Tssr43599	transcription start site region 43599	1059 bp upstream
Tssr43600	transcription start site region 43600	1016 bp upstream
Tssr43601	transcription start site region 43601	849 bp upstream