rs229077927 SNP Detail

Summary

• ID
  rs229077927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:29230311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTCTTGG ATCCTTAAAG
  AAGCGGTCTT TGTTGGTTTT ACAGTGTGGT CTTGCAGAGG AAAACAATAA GTCGTCTCTT
  TCTCCCCCTT TCTCCCCAGT CTTAATTTTC AAGGAATTGA AATAACCTGT TGAGGGAACA
  AATTGGTTGT TTTTGCTGGG TTTCTGCTGC CACATTGAAT GCTTCCTGTA TTCACCTGCT
  Y
  GCTTTGTTGG TTGATTGCTT TCCGGTGGTT ACTAGTCTAT CAGGGGAAAC TCCTTTTCCC
  TGAATGAAAG GACCGAGCCG CTGAGTGTGT CACAGAGAGG AGGAGAAATG CGGAGAAGGG
  AAACAGAAGT GGGAATAAAG AAGCCGGAGG TTGCTTTTGG TTTCATAATA GGTTTGTATG
  AGTGAGTTGT TGGCTTACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402211712	MGP_WTSI_19_29327401	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229077927					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402211712	MGP_WTSI_19_29327401	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:29230311 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10735	CpG island 10735	456 bp distal
Gm41829	predicted gene, 41829	586 bp upstream
Gm59364	predicted gene, 59364	1410 bp upstream
Jak2	Janus kinase 2	within coordinates
Rr405910	regulatory region 405910	935 bp upstream
Tssr155780	transcription start site region 155780	1246 bp downstream
Tssr155781	transcription start site region 155781	1057 bp downstream
Tssr155782	transcription start site region 155782	1044 bp downstream
Tssr155783	transcription start site region 155783	1010 bp downstream
Tssr155784	transcription start site region 155784	598 bp downstream
Tssr155785	transcription start site region 155785	469 bp downstream
Tssr155786	transcription start site region 155786	426 bp downstream
Tssr155787	transcription start site region 155787	321 bp downstream
Tssr158749	transcription start site region 158749	806 bp upstream