rs229087856 SNP Detail

Summary

• ID
  rs229087856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152100063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  CACACACGGA TGGAGGGAAG GGCAGGGAGA GTATTGTAGA TCAGCCTTGA CTATAGAAGC
  TTGCCTCAGC GAAAACAAGC TTCAAATCGC AATGCCTGTT TTGCCAACAA ATGTTAGCAA
  GGCCATGGGT TGGGTTTCTC TCTTATGTTT ACATATTAGT GCCGGGTGGT GGTGGTGCAC
  R
  CCTTTACTCC CAGCACTCGG GAGGCAGAGG CAGGCAGATT TTTGATTTTG AGGCCAGCCT
  GGTCTACAAA GTGAGTTCCA GGCCAGCATG GGCTACACAG AGAAACCCTC TCTCGAAAAA
  CCAACAAAAC AAAACGTTTG CGTATTAGTG CGGTGGTACC ATTCCCACGG AAGAGAAAGG
  GAAAGTAAAC CTGTGGGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360265551	MGP_WTSI_3_152057390	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229087856					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360265551	MGP_WTSI_3_152057390	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152100063 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13949	CpG island 13949	141 bp proximal
Cpgi13950	CpG island 13950	869 bp proximal
Gm43857	predicted gene 43857	186 bp upstream
Gm66519	predicted gene, 66519	within coordinates
Rr66411	regulatory region 66411	463 bp distal
Rr77388	regulatory region 77388	137 bp proximal
Tssr32410	transcription start site region 32410	1018 bp upstream
Tssr32411	transcription start site region 32411	1565 bp upstream
Tssr32412	transcription start site region 32412	1635 bp upstream
Tssr32413	transcription start site region 32413	1936 bp upstream
Usp33	ubiquitin specific peptidase 33	809 bp downstream
Zzz3	zinc finger, ZZ domain containing 3	1047 bp upstream