rs229088257 SNP Detail

Summary

• ID
  rs229088257
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13335181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCTTTAC AGATTAAACA
  TCGTATCCAG ATGCTGGCTG TGGTGGTGCA GGCCTTTACT CCCAGAATTT GGGAGACAGA
  GGAAACTAGA TCTCTGATTT GGGGATAGCC TGTCTACATA GTGAGTTCCA GGCCAGCCAA
  GGATACATAC TGAGACCCTC CACCCCACAC CCCTTATGGT CTTCCCCACT ACTCCCGCCA
  W
  AAAGAAAGTG CCTGGCGAAG CAGCTCAGTG TGCTCACTGC ATGAGCTGGA CAGCTGAGTT
  CCACCCTCAG AGCCTACACA AGAGGGAAAG GGGAGGGGAG GGGAGGGGAG GGGAGGGGAG
  GGGAGGGGGG AGAGGAGGGA AGAACTGACT CCACATGTCC ACCTCAGAAT AAAAGAAATG
  ATAAGATTTA TTTCTATTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322505801	CHEV_8_13285181	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229088257					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13335181 () rs orientation: forward

Symbol	Name	Function Class
9530085L11Rik	RIKEN cDNA 9530085L11 gene	171 bp downstream
Cpgi20111	CpG island 20111	1897 bp proximal
Dcun1d2	defective in cullin neddylation 1 domain containing 2	within coordinates
Gm25014	predicted gene, 25014	1967 bp upstream
Rr659902	regulatory region 659902	1764 bp distal
Rr659903	regulatory region 659903	1699 bp proximal