rs229097844 SNP Detail

Summary

• ID
  rs229097844
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43630069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGAAAAT CAAAATGAGA
  GACTGGGTAC ATACAGTTTC TTCCCCGCAT AAGGGTATAA CCCTAGTTTG TGAGAATGAT
  TACAATTTTC TTCCTATCAA TATCTGATTC TGATGTTTGT AATCCACTCT TGCATAAGAA
  ATCAAAATTT TATCACATAT GCACACATTT TTTTCAAATG CCGGTACTTA AAAACACACA
  R
  AATTCCCAAG TCCTACTATG ATCCTCAGAG AACCTCCCTA GGTCATTTTG AACATCTCTG
  CAAGACCCTG TGTCCAAGCT CCAGGACACA GGTTGGCCTG GATGTTCCTG ACAGTACACA
  ATTTCACATT GCTGTGCTGT TCTCCTGCCC CTTCCTCCTG AAAACCTCAT TTTTGTCTCA
  TTTTCTGGAA TCTTAGTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320269135	CHEV_2_43595577	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229097844					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43630069 () rs orientation: forward

Symbol	Name	Function Class
Gm39804	predicted gene, 39804	640 bp downstream
Rr556296	regulatory region 556296	1836 bp distal
Rr556297	regulatory region 556297	117 bp distal
Tssr17595	transcription start site region 17595	510 bp downstream
Tssr23873	transcription start site region 23873	1377 bp upstream
Tssr23874	transcription start site region 23874	1028 bp upstream