rs229105105 SNP Detail

Summary

• ID
  rs229105105
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31561605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGCACCT TGCTAAGGCC
  GGTATCCTCA CCTGGAAGAC AGTGGTGACA ACAGGAATTG GTAGGTTAGT GAGTATTAAC
  TGAAAAGTGG GGCAGGAGAG CAAAATCCAC CATTGTATTA CCACCAAAGA TAAATCTGCA
  TTAGGTAGCC AGTCTTCCCG ATGTCTGTCC GTCCCCCCCC CCCCGTCGTC CCCCCCCCTC
  M
  CCCCCAACCC TCCAATCTCA CTATGTAGCA CTGACTGTCC TGGAACTTAC TATGTAGACC
  GCTCTGATTT TGAACTCAAG AGATCCACCT GCTTCTGCCT CCCAAATTCT TTTTTTTTTT
  TTTTAAGATT TATTTATTTA TTATATGTAA GTACACTGTA GCTGTCTTCA GACATACCAG
  AAGAGGGAGT CAGATCTCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J
ss353543222	MGP_WTSI_2_31527113	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J
rs229105105					SNP	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353543222	MGP_WTSI_2_31527113	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31561605 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11482	CpG island 11482	513 bp distal
Exosc2	exosome component 2	within coordinates
Rr396882	regulatory region 396882	764 bp downstream
Rr554683	regulatory region 554683	868 bp distal
Tssr17210	transcription start site region 17210	852 bp downstream