rs229110859 SNP Detail

Summary

• ID
  rs229110859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCCCTTG TGGAGGCTAG
  AGATGGTTTC GTTTGGAGAG TAAACCAAGG TCCAGGATGA AGTCAAAAGA AGGGGGCTCT
  GCAACCCGCC TTTAAGATAC CCACTAACAG CAACCATTTT CTCATCACAG AGGCAAGGCT
  AACTGACCTG GAAAGGAGGA GCCTGGGCTG CTGTCCCTCA ACGGAAGAAC CAAAGAGAAA
  R
  AAAAAAACAA ACAGCACCCG GGAAGCCTGG ATCGTACCTG ATGTGCCTCG CTGTCTGAGA
  GTTCACTTAT TTATTTATCT ATGTATTTAT TTATTTATTA ATTCCATTGC CCAGATGTTG
  TTATGTTTAT TTTGATATTT AAAGATATGC ATTCGCTAAT TCACTGTAAT ATCTTAAAAG
  GTCATTTTAA TATGTTAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365847522	MGP_WTSI_5_91334285	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229110859					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365847522	MGP_WTSI_5_91334285	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053118 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Rr614422	regulatory region 614422	1376 bp distal
Tssr47224	transcription start site region 47224	1550 bp downstream
Tssr47225	transcription start site region 47225	1448 bp downstream
Tssr47226	transcription start site region 47226	1379 bp downstream
Tssr47227	transcription start site region 47227	1185 bp downstream
Tssr47228	transcription start site region 47228	1122 bp downstream
Tssr47229	transcription start site region 47229	1101 bp downstream
Tssr47230	transcription start site region 47230	1076 bp downstream
Tssr47231	transcription start site region 47231	1046 bp downstream
Tssr47232	transcription start site region 47232	899 bp downstream
Tssr47233	transcription start site region 47233	849 bp downstream
Tssr47234	transcription start site region 47234	814 bp downstream
Tssr47235	transcription start site region 47235	56 bp downstream
Tssr47236	transcription start site region 47236	17 bp downstream
Tssr47237	transcription start site region 47237	within coordinates
Tssr47238	transcription start site region 47238	4 bp upstream
Tssr47239	transcription start site region 47239	64 bp upstream
Tssr47240	transcription start site region 47240	76 bp upstream
Tssr47241	transcription start site region 47241	91 bp upstream
Tssr47242	transcription start site region 47242	128 bp upstream
Tssr47243	transcription start site region 47243	151 bp upstream
Tssr47244	transcription start site region 47244	185 bp upstream
Tssr47245	transcription start site region 47245	205 bp upstream
Tssr47246	transcription start site region 47246	256 bp upstream
Tssr47247	transcription start site region 47247	300 bp upstream
Tssr47248	transcription start site region 47248	363 bp upstream
Tssr47249	transcription start site region 47249	433 bp upstream
Tssr47250	transcription start site region 47250	571 bp upstream
Tssr47251	transcription start site region 47251	635 bp upstream
Tssr47252	transcription start site region 47252	687 bp upstream
Tssr51812	transcription start site region 51812	1032 bp upstream
Tssr51813	transcription start site region 51813	1015 bp upstream
Tssr51814	transcription start site region 51814	41 bp upstream
Tssr51815	transcription start site region 51815	within coordinates
Tssr51816	transcription start site region 51816	16 bp downstream