rs229113382 SNP Detail

Summary

• ID
  rs229113382
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:4215095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCAGACA GCAGCTGTTC
  GGAAGACGTG ATGGTGGATG AGGGCCGATT CAGACCTGGT GTGCTCTGAG TAGTTCTGGT
  GCGGTGGCGC TGGGATGTGT GGGGTGTGGA GTCACATGCT AACCTATGTG TACAGGAATG
  GTGAACCCCA GACAGGGTCA CCAATGAAGA GACAAGGTGT GTCAGGATGC AGGGAGAAAG
  R
  AAGGGTGCCA ACCTGGTGGC TTCATCACTC CACTATTCGA GGCTCTGCCA AAAGACCACA
  AGAAACAAGA ATCTGGAGGG GGCGGGGTGT ATGTGTGGGG GCGGGGCAAG GAGAACAGAC
  ACAAGGCACC CTGCTAGGAT AAGAACACCT GAGTAGATCC TGAATATGGC TCAGGGCAGG
  AGCTAGGGAC ATGGGGGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382256003	MGP_WTSI_11_4165098	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229113382					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382256003	MGP_WTSI_11_4165098	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4215095 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2511	CpG island 2511	1359 bp proximal
Lif	leukemia inhibitory factor	within coordinates
Rr385518	regulatory region 385518	1523 bp upstream
Rr441796	regulatory region 441796	1501 bp distal
Rr441797	regulatory region 441797	452 bp distal
Rr441798	regulatory region 441798	312 bp proximal
Rr441799	regulatory region 441799	1510 bp proximal
Tssr100120	transcription start site region 100120	782 bp downstream
Tssr100121	transcription start site region 100121	149 bp upstream
Tssr100122	transcription start site region 100122	1386 bp upstream
Tssr100123	transcription start site region 100123	1430 bp upstream
Tssr100124	transcription start site region 100124	1572 bp upstream