rs229129786 SNP Detail

Summary

• ID
  rs229129786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3310842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAAACAAT GTTTCTGGAG
  GAAAAGTATA CCTTTGCTAT GTATTTTGTA ATTGAACACA TTCCATTTAA CAGACAGAAA
  AACCTTTATG AAATAATCCA GAAAAAAGAA CAAGGAACAT GCAAACAAGA GTCAGCTAGG
  TGTGGGGTTA AAACTGCAGT GGTGGCTTTA CAAAGAGCCA GACACCACTG GGCACAACCT
  Y
  CATATGTGGC ACAGGGCTTT TTCTCAAACC CCACTGCTCC TCCCACTCCT CCACATGAGG
  CATGTGCTTG ACCACTGAGC CAGGAAAGCT CTTCATGTTA CAACTGGTGT ACTTTTGTCA
  GTAAAAAACA AAGCAGTGTG AGTCACAGCC TTAGGAGAGA AGCTCACATG TCTTTCAAAC
  TTTGAAGCCA AACATTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392857673	MGP_WTSI_15_3231360	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229129786					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392857673	MGP_WTSI_15_3231360	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3310842 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	within coordinates
Rr498566	regulatory region 498566	within coordinates
Selenop	selenoprotein P	850 bp downstream
Tssr130402	transcription start site region 130402	1992 bp downstream
Tssr130403	transcription start site region 130403	1945 bp downstream
Tssr130404	transcription start site region 130404	1903 bp downstream
Tssr130405	transcription start site region 130405	1885 bp downstream
Tssr130406	transcription start site region 130406	1859 bp downstream
Tssr130407	transcription start site region 130407	1823 bp downstream
Tssr130408	transcription start site region 130408	1793 bp downstream
Tssr130409	transcription start site region 130409	1776 bp downstream
Tssr130410	transcription start site region 130410	1750 bp downstream
Tssr130411	transcription start site region 130411	1702 bp downstream
Tssr130412	transcription start site region 130412	1621 bp downstream
Tssr130413	transcription start site region 130413	1383 bp downstream
Tssr130414	transcription start site region 130414	1329 bp downstream
Tssr130415	transcription start site region 130415	1252 bp downstream
Tssr130416	transcription start site region 130416	962 bp downstream
Tssr133567	transcription start site region 133567	1785 bp upstream
Tssr133568	transcription start site region 133568	1658 bp upstream