rs229130173 SNP Detail

Summary

• ID
  rs229130173
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116242509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTACCA TAATGCCTGC
  CATGGCCTGA GCAGTAAATG CCAGATGCTG TTATTGGAGA TAGCAATTGG TATTAGGCTA
  AAGGAAGCTG TTTAGCTGGT TGCTCTAATG AACACATTTA GATGGGTGGA TAAAGTAGTC
  AGGGGTTTGG AAGCTTGCCC TTGCACATGT TAGGTGAGCA TCCTACGACT GAGCTACATC
  S
  CCAGTCCTAT GTCCTATCTG TTGATCATTT GGCATCAATA ATTCTTCATT GTGTATGTGG
  GAGGGGGCTG TCCTGCATAC CGTAGGGTGG CTAGTGCCAT CCCCGACGTA CAGCCATCAT
  ATCACCTCTT TGCAACTGAA ACAAAACATC CTCAGACATT GCAGAGGGTC TCAGACCAGC
  AGGAGCAGTC CATTTTGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895036	CHEV_3_116151778	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229130173					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116242509 () rs orientation: forward

Symbol	Name	Function Class
Gm22361	predicted gene, 22361	296 bp upstream
Gm66091	predicted gene, 66091	within coordinates