rs229135251 SNP Detail

Summary

• ID
  rs229135251
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88185613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGCCTCT TGATGTCAGG
  AAAGCGAGCT GCTACGGTTG AAGGCCTTTG TTCTCTTTGG GAAGCTTACA AAAGTGGTTG
  GGATTTCCAA GAAGCATTTC TTCAAAGGGG AGGTGAAGAG AGGCTGGGTC TCCCTCCTGC
  TGCACTGCCA GGACCCCTGC CCCAGCGTGG CCCAGGTAAC ACGCCCCTCC CTCCCCATAT
  Y
  CTATGATCTG GGACCACAGT GCCAAAAGGA AAAGGGAAAC CTTGCATCTG CTGGCTCAGT
  GAGCTACTAG CTCTTGTACT CTCCACCCGC CCCATTCCTT CTGCAGACTG AGACAGGGAC
  CATCCCAGGG ACTCCTAAAG AGGTCTTATA AAAGGCTTCT CTGTGAGGAC GCATGCTATG
  GCTCCCCTTT GCTCTAGTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	C57BL/6J	DBA/1J	FVB/NJ	QSi5/Ianm	SJL/J	SPRET/EiJ	ZALENDE/EiJ
ss350399113	MGP_WTSI_1_90154466	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	C57BL/6J	DBA/1J	FVB/NJ	QSi5/Ianm	SJL/J	SPRET/EiJ	ZALENDE/EiJ
rs229135251					SNP	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399113	MGP_WTSI_1_90154466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88185613 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	988 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	1219 bp upstream
Tssr7959	transcription start site region 7959	1241 bp upstream
Tssr7960	transcription start site region 7960	1256 bp upstream
Tssr7961	transcription start site region 7961	1303 bp upstream
Tssr7962	transcription start site region 7962	1457 bp upstream
Tssr7963	transcription start site region 7963	1485 bp upstream
Tssr7964	transcription start site region 7964	1500 bp upstream
Tssr7965	transcription start site region 7965	1536 bp upstream