rs229136730 SNP Detail

Summary

• ID
  rs229136730
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107149397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCTGGGA GCTTACGGAA
  GGGCTGACAT TGCTCCATTC TTCAGAAACT CAATTAAGCA AGCATTCACT GTGACCCTCC
  CCTGTGACAA GACCGGGAGC TGCTGGGCAC AGGATCAAAT GCACCAAGAA AAAGCCCTCT
  TGGCACAGTC AGGGTGGCTT TGTGGCAGAT GCAGAGTGAA AGGTGACAGG GGAACTAAAC
  K
  GGCATCACCT CAAGGATTCA AAGGCAAAAA GATGAAGATG GAGGTGAAGT AAGTTGAGAA
  GCAAGTTTGG GAACGTGTGG GAAATGACGA TGGGAAGTGC TGAAAAAAAT GGGTTCCCTT
  CTGAGAGGAT CAAGCTGGTG GAGGTGTGCT GAGCAAACCT TTAATAGATC TCTACACAGC
  TGCAGACATG GTGGGAGCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864906	CHEV_3_107044999	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229136730					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107149397 () rs orientation: forward

Symbol	Name	Function Class
Gm66085	predicted gene, 66085	within coordinates
Rr582947	regulatory region 582947	205 bp distal
Rr582948	regulatory region 582948	within coordinates
Tssr31192	transcription start site region 31192	282 bp downstream
Tssr31193	transcription start site region 31193	201 bp downstream
Tssr31194	transcription start site region 31194	163 bp downstream