rs229139380 SNP Detail

Summary

• ID
  rs229139380
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71149699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATGGTCA CTTGCCTACA
  AAAGGGGATA AAACCTGGGT GTGTGGCTCT CTGAGGCAAC AACTGGTCAA GGCTCGGGCG
  GGGGTTTGGG GGGAGGGGGG AGAACCCTCT GAGGCCTCAA TGGCCTGGGC GAAGGTCCTG
  AGGTGCAAAG GAGCTCCAAT GGGGTACAGA TTGGAGAGGA GTCACAGAGA AGGGATGAGA
  S
  TCCTCTCTGG TCTTCTAAGG GTTGTGTTGA GTGTGCTGGG ACTTGTTGCT CCCACCTCTT
  CCACCTCCGT TCCCAGCAAG CAGAAAAGCC TGCATCAGGC CTGGTGGCAT ACTGTACTAA
  TTAAGAGGGT AATTACCAGT CCGGATTCTC ATTTGCAGGC TCCACTCTGG GACCCACCTC
  AGGCTCTAGA AGAGTCAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375104807	MGP_WTSI_8_73220948	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229139380					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375104807	MGP_WTSI_8_73220948	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71149699 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20485	CpG island 20485	1369 bp distal
Cpgi20486	CpG island 20486	38 bp distal
Gm64347	predicted gene, 64347	within coordinates
Gm64349	predicted gene, 64349	1444 bp upstream
Jund	jun D proto-oncogene	1900 bp upstream
Rr368548	regulatory region 368548	1320 bp downstream
Rr368549	regulatory region 368549	1247 bp upstream
Rr368550	regulatory region 368550	1610 bp upstream
Rr400910	regulatory region 400910	1469 bp downstream
Rr664888	regulatory region 664888	47 bp distal
Rr664889	regulatory region 664889	954 bp proximal
Rr664890	regulatory region 664890	1455 bp proximal
Rr664891	regulatory region 664891	1609 bp proximal
Rr664892	regulatory region 664892	1754 bp proximal
Tssr77799	transcription start site region 77799	1477 bp upstream
Tssr77800	transcription start site region 77800	1882 bp upstream
Tssr81647	transcription start site region 81647	1268 bp downstream
Tssr81648	transcription start site region 81648	1285 bp downstream