rs229139792 SNP Detail

Summary

• ID
  rs229139792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58955852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAGAGGC GGCGGCGGCG
  GCGGCCGCCG GTTAGAGCCC AGTCGCTGCT TCAGCTGCTG TTGCTGCTTC TGCAGCGCTC
  TGCTCCCTGC GCTTGCTACG GGAGGCCGGG GAAGCCGCGC GGACAGTCCT CGGTGGCCTG
  GGCCGGCACT GTCCTGCTAC CGCAGTTGCT CCCCAGGTGG GATGTGCCGC GCCACCTGCC
  Y
  ACCTCCCCTC TCCCCCCGCG CCCAGCGGCC GGGGAGGATT CTGCAGCATC ATTGGGGCCC
  CAGCGCTGCC GCAGCCTCTT TGGAGGGTCC TTGGCTTGGC CTATGCCATG GAATCTGCTC
  TCAAAGACCC GTTACCGACT TCTCATGCCT CGGCCTCAGG CTTGAAGGGA GGGCGGGCAC
  ACGGGGGGGG GGCACTAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388772361	MGP_WTSI_13_58909399	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229139792					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388772361	MGP_WTSI_13_58909399	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58955852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5731	CpG island 5731	within coordinates
Ntrk2	neurotrophic tyrosine kinase, receptor, type 2	within coordinates
Rr273002	regulatory region 273002	1452 bp distal
Rr281494	regulatory region 281494	within coordinates
Tssr120082	transcription start site region 120082	1416 bp downstream
Tssr120083	transcription start site region 120083	1383 bp downstream
Tssr120084	transcription start site region 120084	338 bp downstream
Tssr120085	transcription start site region 120085	200 bp downstream
Tssr120086	transcription start site region 120086	155 bp downstream
Tssr120087	transcription start site region 120087	136 bp downstream
Tssr120088	transcription start site region 120088	225 bp upstream
Tssr120089	transcription start site region 120089	645 bp upstream