rs229139989 SNP Detail

Summary

• ID
  rs229139989
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156264354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGAGAGA TGTGTTTCTG
  TATCTCTTCC CCCATGTTTT GGGCACTGCA TGCATGTCTA GTCTGGGTGA GTGTGTGCAT
  TCTCCCTGTA TATTTCTTGT GCATTTAGGT GCATTTGTAC ATTTTACTGA TGAAGAATAA
  ACAAAATATC TCTGGATGTA TATGTGCATT TGTTTTGATA AGTTCTGGTA TATCTGGTTT
  K
  TTTTTTTTTT TTATGAGTGT GTAAGCTGTT TGTGTATTGG CGAGCCAGGA TGGGGACAGT
  AAGAGAAGTG CCATTTTGCT GCTAACTGGA ACAGAATAGA AAGCCCCCTA TATTTGAAAA
  ACAAGATTAC AGGGAAGTTT GCGGATTTAG TCACTGTCTG CCGGGTTCAG ATACTGGTAC
  TGAAATGTAG GTAGACTAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	RF/J
ss356235788	MGP_WTSI_2_156248170	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	RF/J
rs229139989					SNP	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356235788	MGP_WTSI_2_156248170	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156264354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	452 bp distal
Epb41l1	erythrocyte membrane protein band 4.1 like 1	within coordinates
Rr55936	regulatory region 55936	within coordinates
Tssr21156	transcription start site region 21156	1683 bp downstream
Tssr21157	transcription start site region 21157	1572 bp downstream
Tssr21158	transcription start site region 21158	1391 bp downstream
Tssr21159	transcription start site region 21159	1369 bp downstream
Tssr21160	transcription start site region 21160	1358 bp downstream
Tssr21161	transcription start site region 21161	1320 bp downstream
Tssr21162	transcription start site region 21162	1311 bp downstream
Tssr21163	transcription start site region 21163	1291 bp downstream
Tssr21164	transcription start site region 21164	1260 bp downstream