rs229140335 SNP Detail

Summary

• ID
  rs229140335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:70109648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCATATC AAGGTCACAT
  TGGGAAATAC TGGTACAGGG AGTGGGTAAA AATGGTAATT TATGGGTGAT TATCAGTCTG
  TATAAAAGTG ATAAAAGCTG ATTTTAGGTA GTGTTTATTC AGGAAAACTT TATTTTTATT
  TTCTCACCCC TTCCCTTTTC CCTTCCTAAT CAGTGCTTTG GTTTTACCTT AACAGGTGAA
  Y
  GCTTATGCTA TGAAGAAGAT AGTTGGTTCA GGTTTCTTAG TCAGCCAAGT GGAAATTTCA
  GTGTGAAGTG ATGAAAATTT AGAGTTATGA AAGTAAAAAA TGAAGTTACA GAATTGGGTG
  TCTACTAGGT ACTTTATTTC TGGGTTCAAG CCCCCCCCCA TTTGTAGATA TATATATACC
  TTTATCTAAG ACCTTTAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325235733	CHEV_16_70313005	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229140335					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:70109648 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8364	CpG island 8364	1076 bp proximal
Gbe1	1,4-alpha-glucan branching enzyme 1	1189 bp upstream
Rr517848	regulatory region 517848	699 bp proximal
Tssr138939	transcription start site region 138939	1207 bp upstream
Tssr138940	transcription start site region 138940	1238 bp upstream
Tssr138941	transcription start site region 138941	1251 bp upstream
Tssr138942	transcription start site region 138942	1297 bp upstream
Tssr138943	transcription start site region 138943	1331 bp upstream
Tssr138944	transcription start site region 138944	1359 bp upstream
Tssr138945	transcription start site region 138945	1717 bp upstream
Tssr138946	transcription start site region 138946	1907 bp upstream