rs229142141 SNP Detail

Summary

• ID
  rs229142141
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113618577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGGTGA CTCTCCTTTG
  TGCCCTCAGC CTTCCTATCC CCTCCTTGCA GGCTCTGTCC TAGTCTCAGG GTGCCCATGA
  AGATGTCTAT TACCACTGGA TTGCCCAGGG AACTCTGGCT GAAGTGTGGC TCAGTGGTAG
  AGTGTGTGCT TACTGTGCCT ATGGGCCTGG GCTCAGCTAC TGGAATGACA TAACAAAGAG
  G
  AGGAGGGAAG GAAGGAGGGC GGAGGGAAGG GAGGGAGGCA GGGGTTGGTG GGTAAGAAAG
  CCTATTACAC AGATGTGTAA TTCCCGAATG TAGGAAGTAG AGGTAGGAAG ATCAGGATGG
  AATTCCACTC CGGCCTGGGC TACTTTTGAG GGTCTGTCTC AAAAAGCCAA AAACCAAGTA
  AGCAGCAAGC AATCAAATGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911278	CHEV_6_113591610	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229142141					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113618577 () rs orientation: forward

Symbol	Name	Function Class
Gm43964	predicted gene, 43964	56 bp upstream
Irak2	interleukin-1 receptor-associated kinase 2	Intron