rs229142296 SNP Detail

Summary

• ID
  rs229142296
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106104659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAAATGTA TGTTTCTCCA
  GGTTAGCTCT GTTTCGATTG AATTTAGGGC AGGTGGCTCG CATGTCTCCA GCTAATTTTT
  GAGCTATTAT TTTCCATATG GTGGCAGAGA TAGCAGGAGT GAGCTTGCGC CATAGGAAGT
  CAACAAAGGA TGTGATTGCG GTGGCACCTT GGCAGGAGAT CTTAAAACTA ATAAAAAAAT
  S
  GTCTTTCTTT CTCTCCAGAT AGTTCACAGG GTCATTTGCA GTCTTGAATG CCTCGTGCAT
  TTTCTTGAAA TCCTTGGATG CTCTTTGGAA TAAGTACAAG GATAAGTCAA TGATGTAGTC
  TCTGGTAAAT GTGTAGTCTC CCTCACAGGG TTCAGATTTC AGCTCATTTT CTATGATCTT
  CAAGATTTCA TGAAAGTAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss372628534	MGP_WTSI_7_113648966	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	G	C	C	C	G	C	C	G	G	G	G	G	G	G	C	C	C	C	C	G	C	C	G	C	G	C	C	C	C	C	C	C	C	C	G	C	G	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs229142296					SNP	C	C	C	C	G	C	C	C	G	C	C	G	G	G	G	G	G	G	C	C	C	C	C	G	C	C	G	C	G	C	C	C	C	C	C	C	C	C	G	C	G	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372628534	MGP_WTSI_7_113648966	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106104659 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr68401	transcription start site region 68401	1814 bp downstream
Tssr74117	transcription start site region 74117	1926 bp upstream
Tssr74118	transcription start site region 74118	1879 bp upstream
Tssr74119	transcription start site region 74119	1481 bp upstream
Tssr74120	transcription start site region 74120	1464 bp upstream
Tssr74121	transcription start site region 74121	1401 bp upstream
Tssr74122	transcription start site region 74122	1384 bp upstream
Tssr74123	transcription start site region 74123	1351 bp upstream
Tssr74124	transcription start site region 74124	1306 bp upstream
Tssr74125	transcription start site region 74125	1295 bp upstream
Tssr74126	transcription start site region 74126	1259 bp upstream
Tssr74127	transcription start site region 74127	1108 bp upstream
Tssr74128	transcription start site region 74128	1028 bp upstream
Tssr74129	transcription start site region 74129	497 bp upstream
Tssr74130	transcription start site region 74130	448 bp upstream
Tssr74131	transcription start site region 74131	237 bp upstream
Tssr74132	transcription start site region 74132	61 bp upstream
Tssr74133	transcription start site region 74133	588 bp downstream
Tssr74134	transcription start site region 74134	815 bp downstream
Tssr74135	transcription start site region 74135	898 bp downstream
Tssr74136	transcription start site region 74136	966 bp downstream
Tssr74137	transcription start site region 74137	1032 bp downstream
Tssr74138	transcription start site region 74138	1062 bp downstream
Tssr74139	transcription start site region 74139	1096 bp downstream
Tssr74140	transcription start site region 74140	1151 bp downstream
Tssr74141	transcription start site region 74141	1551 bp downstream
Tssr74142	transcription start site region 74142	1694 bp downstream