rs229155034 SNP Detail

Summary

• ID
  rs229155034
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31017840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAAATATA ATGATATATA
  ATAAATCTAT TTTTCTGCCC TCTTTGTTAG CTCCTCTTAG TTAGGCTCCA CCCAACAGTT
  ACCTAGCAAC AGCCAGGTAG GCCTGGCTTG CTATAAAAGG GACTGTGTGG TCTCCTTCAC
  TCTCTTTTCT CTGACTCTCT TCTCTCTCTG ACCCCTTTCT CCTTCTCTCC CCTTCTCCCC
  Y
  CCCCCCCCCC CCACCACATG TTCTGGTCAG CCTCTTCCCT CCCTCCTCTC CCCTTTCCAT
  GCCCTAAATA AAGTCTATTC TATACTAGAC CCGTCTATCA TATGGCTGGT ACCTCAGGGC
  AAGGGATGCC TCAGCACGGA CCTGCTGAGG CACCCCTCCC ACCTCACCAT ACTGCACTCT
  ACAGAACATA TCCTTGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	RIIIS/J	SWR/J
ss353531171	MGP_WTSI_2_30983348	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	CAST/EiJ	CE/J	CZECHII/EiJ	RIIIS/J	SWR/J
rs229155034					SNP	T	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353531171	MGP_WTSI_2_30983348	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31017840 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fnbp1	formin binding protein 1			Intron
				Noncoding-Transcript-Variant
Gm75522	predicted gene, 75522			within coordinates
Rr554531	regulatory region 554531			270 bp distal
Rr554532	regulatory region 554532			172 bp proximal