rs229156146 SNP Detail

Summary

• ID
  rs229156146
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130550312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTCCCTGG CCCCAGCAGC AGCCCAGGCC
  TGATCCTGGG CCTGGGCCTG GGCCTGGGAT GGAGCCTGGC CCTGCTTCTT TCTGCTCAGG
  CTGCTAGCGT AACACAGACT GTCCTAAGGA GCAGAGGTGC TGCCATCTGC CCCAGACTGT
  R
  TCCTTATGAC CCCTTCTTTG GTCCCATTCC CTCCAGCCCG GGGCTTCAGG ACCTTGTGTC
  CCATGGACAA GAGGAAGGAA GCCCTGGGTT GCTGGTTGAA ACAGGGGCAG GGGCAGGGTT
  AAGATGGCCC ACAGTGCTTG CTGATGTCCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318865	CHEV_4_130378916	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229156146					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130550312 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	1393 bp downstream
Sdc3	syndecan 3	within coordinates
Tssr39279	transcription start site region 39279	800 bp downstream
Tssr39280	transcription start site region 39280	333 bp downstream
Tssr39281	transcription start site region 39281	275 bp downstream
Tssr39282	transcription start site region 39282	41 bp upstream
Tssr39283	transcription start site region 39283	111 bp upstream
Tssr39284	transcription start site region 39284	312 bp upstream
Tssr39285	transcription start site region 39285	382 bp upstream
Tssr39286	transcription start site region 39286	449 bp upstream
Tssr39287	transcription start site region 39287	475 bp upstream
Tssr39288	transcription start site region 39288	510 bp upstream
Tssr39289	transcription start site region 39289	639 bp upstream
Tssr39290	transcription start site region 39290	646 bp upstream
Tssr39291	transcription start site region 39291	794 bp upstream
Tssr39292	transcription start site region 39292	871 bp upstream