rs229161988 SNP Detail

Summary

• ID
  rs229161988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115152312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTCTAT GCTGAGTCCA
  CTTTGATGGG TCTGGTTTAT TGGACGATTG CTTATTTTTT CTTCCTGTGT TTCCATTTTA
  TTTCATGAAA TACACTTTCC AAGAAAGCAA CCTGGTATTT CTGAAATTTT GTAGTTTGGT
  GTCACTTAAA ATAAACTTTC ATCTCATCAG ACTAATTTTA CACTTCAACT TAAAGGCAGC
  Y
  CATTCGTTCA TTCAACGAGG GCGTGAATGT AGCCAATGCT TGCCATTCTC TGTGTCGCAT
  TAGATACAAT GTCTCTGTCC TCAGAGAGCT TACATTTTTA ACCAAGGAAA CAACGCATGC
  GCAATTTACA CACTGCATGC TTTTTAAGGA GAAGCAATTC AGAATGTTTT ACAAAGATAC
  ATGGGAAGCT AGCTGAGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381864282	MGP_WTSI_10_114753463	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229161988					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381864282	MGP_WTSI_10_114753463	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115152312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	294 bp distal
Gm10752	predicted gene 10752	within coordinates
Gm67120	predicted gene, 67120	within coordinates
Rab21	RAB21, member RAS oncogene family	772 bp upstream
Rr402237	regulatory region 402237	642 bp downstream
Rr402238	regulatory region 402238	within coordinates
Rr439193	regulatory region 439193	818 bp distal
Rr439194	regulatory region 439194	768 bp distal
Rr439195	regulatory region 439195	within coordinates
Rr439196	regulatory region 439196	580 bp distal
Rr439197	regulatory region 439197	1123 bp proximal
Rr439198	regulatory region 439198	1264 bp proximal
Tssr95806	transcription start site region 95806	1353 bp downstream
Tssr95807	transcription start site region 95807	1313 bp downstream
Tssr95808	transcription start site region 95808	737 bp downstream
Tssr95809	transcription start site region 95809	713 bp downstream
Tssr99318	transcription start site region 99318	1520 bp upstream
Tssr99319	transcription start site region 99319	1477 bp upstream
Tssr99320	transcription start site region 99320	885 bp upstream
Tssr99321	transcription start site region 99321	792 bp upstream
Tssr99322	transcription start site region 99322	783 bp upstream