rs229165675 SNP Detail

Summary

• ID
  rs229165675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106478123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAAAGTG AGTTCCAGGG
  CAGCCAGGAC TACACAGAGA AACCCTGTCT CAAAAAAACC AAAAAAAAAA AAAAAAATAT
  ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATTAAATGGG GGCTGGAGAT
  GGCTCAGAGG TTAAGAGCAC TGGATGCTCC GGGGGACTTT GGTTCAATTC CCAGCACCCA
  Y
  ATGTCAGCTT ACAATTGTCT GTAATTCCAG TTCCAGGGAA TCTGACATAC CCGCACATCA
  GCCTGTATGC AGGCAAAACA CCAATGCAAA TGAAAAATAA AAAGGAACCA TCAAAGCAAA
  TTCTAAAAGG CTAAAACATT ATTAAATGTA TTACATTAAA GTCTAAAACC AGTACAAATA
  GCATCCAAAT GTTTTGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321246843	CHEV_4_106293531	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229165675					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106478123 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	1457 bp proximal
Gm69799	predicted gene, 69799	1442 bp downstream
Rr596779	regulatory region 596779	1691 bp distal
Rr596780	regulatory region 596780	1016 bp proximal
Tssr38185	transcription start site region 38185	1498 bp upstream
Tssr38186	transcription start site region 38186	1560 bp upstream
Tssr38187	transcription start site region 38187	1602 bp upstream
Ttc22	tetratricopeptide repeat domain 22	1523 bp upstream