rs229170021 SNP Detail

Summary

• ID
  rs229170021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26051935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAGCTCT TGCGCACTCG
  GGCTCTTATC AGGGCTGCCG CCGCCACCAG TGCCCAGCCG CGCGCCGCCC TCCTTTTCCT
  CCTTGCCCTT CATGGCGCCG CGCGGCACGG CTTGGGCTCC GCGCCCGGCC ACCTAGATCT
  CGCAGCCCGC GCAGCGATCA GCTCCGCCCG GTCGGCGATC CGCCACCGGA ACTTCCGGTG
  Y
  GGGGCGGAGC TGGCATGGGG ACACGTGAGC AAAGGCGGAG CCTCGTGGAT TGAGCCAGTT
  CCCTTAGCTC TGAGAAGCTT CCGCCGCGCT CTACAGGCCC CGCCCTACAG TAACCGAGAC
  CTACCCTGCT CAGACCAAGG CTCCGCCCAT CGGCGCTCAA GCCCCGCCCT CCGGCCCCAA
  GCTGGGCGAA CGTGGCAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397885788	MGP_WTSI_17_25969906	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229170021					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397885788	MGP_WTSI_17_25969906	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26051935 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8785	CpG island 8785	within coordinates
Gm20683	predicted gene 20683	1504 bp downstream
Gm56915	predicted gene, 56915	within coordinates
Jmjd8	jumonji domain containing 8	1118 bp downstream
Mir3082	microRNA 3082	1533 bp upstream
Rhbdl1	rhomboid like 1	1504 bp downstream
Rr405106	regulatory region 405106	within coordinates
Rr523679	regulatory region 523679	within coordinates
Rr523680	regulatory region 523680	390 bp proximal
Stub1	STIP1 homology and U-Box containing protein 1	42 bp upstream
Tssr143193	transcription start site region 143193	146 bp upstream
Tssr146863	transcription start site region 146863	84 bp upstream
Tssr146864	transcription start site region 146864	within coordinates
Tssr146865	transcription start site region 146865	404 bp downstream