rs229178394 SNP Detail

Summary

• ID
  rs229178394
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:30913715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCTTATTC CTCTGACCAT
  AATGAGTCAA AGTTTCTTGC AGAGAACCGG TTAAATACAC TTCAAGTTTT CAAACAGCCT
  TGATACATTG TAGTAGGATC TATCATAGCA TCTGTGACAG ACAATAGCAC TTAGGGTTAC
  TTTTTGTTAT CTCTTAAATG TTTTTTTCTT AAGTTTCCAA TGTATCAATA GACACAACTA
  W
  AAGGTAAAAC CCCTGGAGTC CTTCAGTAGT GTGTTGAAAT CCAGAGAGCA AACACGGAGT
  CCACAACAGT TTTGTTTACC CGATCCCAGC CTTCAGTTAA GTGTTATGGT TTAACTGTTG
  CCTGTCGTAG GTCACTGTAA CCAAAACGAG CCCCTTAAAG ACCACGATTG AGTCTTCAGT
  CTGCAAAGAC AATTACAACG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349110523	MGP_WTSI_1_30931479	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229178394					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349110523	MGP_WTSI_1_30931479	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:30913715 () rs orientation: forward

Symbol	Name	Function Class
Cpgi99	CpG island 99	362 bp distal
Gm7256	predicted gene 7256	1159 bp downstream
Gm70275	predicted gene, 70275	298 bp upstream
Phf3	PHD finger protein 3	726 bp upstream
Rr371054	regulatory region 371054	within coordinates
Rr408756	regulatory region 408756	1064 bp distal
Rr408757	regulatory region 408757	563 bp distal
Rr408758	regulatory region 408758	within coordinates
Rr408759	regulatory region 408759	376 bp proximal
Tssr6135	transcription start site region 6135	621 bp downstream
Tssr6136	transcription start site region 6136	374 bp upstream
Tssr11167	transcription start site region 11167	977 bp upstream
Tssr11168	transcription start site region 11168	709 bp upstream
Tssr11169	transcription start site region 11169	1277 bp downstream