rs229180953 SNP Detail

Summary

• ID
  rs229180953
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:99099663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTACTAAG TATTGTAAGA
  CTCTGGTGAG CCTTAGCTTG CCAGGGGACC CCCTGAGTGA ACCACACAGA GCCAGTAATC
  AATGCAGAAA GTAAGAGGAA TGTATTGTTC CAACGCATTG GGATTGTCCT ATACCTCAAG
  GAGAGATGGT GAGCACTCAC CCACCCCCAA TCCCCCCACA CTCACCCCCT CCCCCCCCCC
  G
  CTGCTGATTT GGGCATTCTT TATACAGGTT TTTAGAGCAG CAGCCATTAG GCACAATGTG
  ATTGGCAGAA CAGTGTGACT TTTAAACTGA TTGGTCTTTA GGGAATGAGG TGGCAGGGTC
  TGTACTGCAG AATTTGTTTA CATGCTCTAG GCCTCCCTCA CCCCTCCCTA CCCTCTGCAG
  CTGGCCAATG ATCTTTCTGC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss375734083	MGP_WTSI_8_100896931	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	LEWES/EiJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs229180953					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375734083	MGP_WTSI_8_100896931	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:99099663 () rs orientation: forward

Symbol	Name	Function Class
Rr382525	regulatory region 382525	within coordinates
Rr668405	regulatory region 668405	53 bp proximal