rs229188806 SNP Detail

Summary

• ID
  rs229188806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94005780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGGTTG ATTTTGGTCC
  TCGTTCTTTA TCATCCTTGA CAGGCTCCCG CTGTCTGTCC GCCTGGGCCA CGGTGTTCTT
  CTTCACTCAC TCATTCATCC TCCGCCCTCC TTCCCATTCT CTGTCCAGCC TATGTCCCTT
  TCCTCACGGC TCTAACAGAC ACTGATACTC CTTTACCCAG CTCTCTCTCT ACTCTTAGCC
  Y
  CATCCTTTCA GAAATATCTT TTCAGTACAT AGCCCTATCA AAAAAAAAAA AAAAAAAAAA
  AAAAAAAAAA GCAGAGCAAA TGCTAATGCT AAAAGTATTA GGCAGTAATA ATTAATTAAT
  TTTAAAAAAA CAGCTGAGAA AATAAGTTCT AAAACCCAAA CCTAGAATCA TTTAAAAAAG
  AAAAAAGAAA AGACTTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321864583	CHEV_6_93978793	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229188806					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94005780 () rs orientation: forward

Symbol	Name	Function Class
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	within coordinates
Tssr62166	transcription start site region 62166	37 bp downstream