rs229191654 SNP Detail

Summary

• ID
  rs229191654
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95739986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACGGGCTG GAGCTGGCGT
  CCATGATCCC CGCCCTGCGG GAGTTGGCCA GGTAGGGCCG CGCGTCGTCG CCAGCTTCGA
  GTCGCCGGGT CTCCTCGGCC CGCGCCGCGG CCTGTGGCCG CCGTTCCCTC CCTCACAGTG
  GCAGTTGGCC GGAGCGCCGT GGCGACCCAC GTGCCGGGGT GACCGTGGCA GCCGCGGCTC
  S
  GCTCGCGGGG AGCCAGTCCA CGCGAGCTGC TTCCCGCTTG GCCTCGAGAA GGGTCTCTTC
  TGGCCATCTT ACCACACTCG TTTGCTTCCC GAAAACTTCC CCCGGGTCCT GGTCCTTTGG
  TCGTTGTTGA CGGAATCCAT TGGCTGAGGT TTTGTTTGGG AATCACGGCC CCGCTTCTGA
  GGGAAGCGCG GCGGTTTCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323104517	CHEV_9_95758352	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229191654					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95739986 () rs orientation: forward

Symbol	Name	Function Class
1700065D16Rik	RIKEN cDNA 1700065D16 gene	51 bp upstream
Atr	ataxia telangiectasia and Rad3 related	within coordinates
Cpgi22158	CpG island 22158	within coordinates
Rr206894	regulatory region 206894	within coordinates
Rr368834	regulatory region 368834	222 bp downstream
Rr401608	regulatory region 401608	589 bp upstream
Tssr86577	transcription start site region 86577	247 bp downstream
Tssr86578	transcription start site region 86578	223 bp downstream
Tssr86579	transcription start site region 86579	11 bp upstream
Tssr90940	transcription start site region 90940	363 bp upstream
Tssr90941	transcription start site region 90941	57 bp upstream
Tssr90942	transcription start site region 90942	38 bp upstream