rs229196228 SNP Detail

Summary

• ID
  rs229196228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40760179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTGGCG CCCCAGTGCG
  GAGCCGGACC GGCGGCAGCC GCCGAAGCAT GTAGAAGGGG TACGGCGCGA GCCCCCCACG
  GTTTCGCGGT GAGCACGAGT CTCTCAGGAT TTTGTCCCTT TTTTTTCTTC CCGGGGTCCT
  GACGAGGGAA CTGTTCTCCA CCGACCCGAG CCGAGAGGGG CGTGTGGATG AGCCGGGGTC
  Y
  GCAGCGGCGG CGATGGATGG GCGCGCCGCC CCCGCCCCCA TCCCGGGCTC CCCCGCGCCC
  GCCGCCCAGC AGCCCGGGCT GCGCGTGGAG GACGAGGCGT GGGATCTCGG GCGCGGGGAC
  TGGCCCGAGG CTGCTCTGGG TGCAGCATCT GCGGCTCTCA CCTGCGGCGC GGGGTTCGGG
  GCTCCGATCC CGCCGCTCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss380132630	MGP_WTSI_10_40603989	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs229196228					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380132630	MGP_WTSI_10_40603989	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40760179 () rs orientation: forward

Symbol	Name	Function Class
Cdc40	cell division cycle 40	1040 bp upstream
Cpgi1464	CpG island 1464	within coordinates
Rr401845	regulatory region 401845	644 bp downstream
Rr430264	regulatory region 430264	346 bp distal
Rr430265	regulatory region 430265	406 bp distal
Rr430266	regulatory region 430266	within coordinates
Rr430267	regulatory region 430267	553 bp proximal
Tssr93031	transcription start site region 93031	700 bp downstream
Tssr93032	transcription start site region 93032	675 bp downstream
Tssr93033	transcription start site region 93033	585 bp downstream
Tssr93034	transcription start site region 93034	549 bp downstream
Tssr93035	transcription start site region 93035	321 bp downstream
Tssr97391	transcription start site region 97391	1053 bp upstream
Wasf1	WASP family, member 1	within coordinates